the 800 is very prone to crank failure. There is a really good post on SnoWest.com regarding it, posted by Indydan (Indy Specialty). Having a wider bearing helps, as does an engine plate, torque link, and push stop. Also, checking the cases for spec is very important. My 2004 800 case was out, and crank was gone, just replaced it this summer. A buddy I ride with with a 2002 800, same issues with the crank, his case was ok. Cranks are 950 bucks (OUCH). Getting the primary clutch balanced seems to be one of the biggest things you can do to keep these engines from failing.
You should be able to get recall info from the dealer. There are also other updates that your dealer may or may not be willing to share.
They don't make titanium VES valves any more. You will get stainless when you order. There is very limited water jacket around the area of the VES valve, and that has caused some of the old stock aluminum ones to melt. The lucky guys have the parts go out the exhaust, the unlucky ones suck the parts into the cylinder and does serious damage. It's worth changing. Also, get the new bellows and probably a new spring, there are different colored springs for different elevations.
That's the bad news. The good news is they climb really well and are a blast to run. Stock is about 134 hp, putting on the SLP air horn modification, a couple of flow-rites and an SLP single pipe will put you up to around 150 with no loss of reliability. Plus, you lose about 10 lbs of weight with the exchange.
Good luck in the decision!
My 2004 has the 151", the 2002 has a 144". For straight up climbing, the 151" climbs a bit easier, but in the trees, I like the 144". It is easier to turn.