another place to check is your carbs... from what you've described, it sounds like your mid-range jetting is off, might be a good idea to remove carbs, clean them(replace any parts if necessary) and try again.. just a thought.
'03 Indy 500 sks (Scumpman's Kicka** Snowmachine) extended skid/track to 136" from TracksUSA, AC roller clutch, Holtzman Tempaflow, clutched and geared, 2" risers, skidplate, old Pol rack.